I see you uploaded this post a long time ago. You have probably sorted the problem…
…away way back in time. I mean then!
I have just updated the firmware for the motherboard, by pressing the resart button on the motherboard, at the same time pressing the button to upload, on replicatorg.
I actually pressed the upload button just before the reset button, so it was not the same time!
When you normally press the restart button, the green leed at the top, switches off and the red led just below, switches on. Flashing for a few seconds. Then the green led switches back on again, and stays in this condition (state).
However, when I klicking the upload button, on replicatorg just before pressing the reset button on the mother board.
The green led switches off, as before. The red led starts to flash again but not for a few second, this time for a lot longer, whilst the firmware is being uploaded, once uploaded the red led switches off, and the green led switches back on again.
Replicator says firmware update succeeded!
I had problems loaqding the firmware for the extruder, and it was the reset button; causing the problems.